An interactive, exploratory data analytics web-app that provides access to transcriptomics data of the KOMP knockout mice by Baylor College of Medicine.
Plot and explore RNA-seq gene expression data. Compare gene expressions across different knockout mouse lines.
Find clusters of samples with similar gene expression characteristics. Explore gene expression trends using Parralel coordinates plot.
Compare groups of samples to find differentialy expressed genes. Play with Gene Ontology module to identify enriched terms.
Interactive design with clickable plots where selections propagate to other modules.
Stajdohar M, Kokosar J, Jeran L, Blenkus D, Janez T, Salvo S, Chen R. "kompExpress: visual analytics of KOMP knockout mice transcriptomics data", June 2015
kompExpress was build in collaboration with Bioinformatics Laboratory at University of Ljubljana and Rui Chen’s lab at Baylor College of Medicine.
Powered by Genialis
We should talk about your data and how to make it compatible with kompExpress. We kindly ask you to briefly describe your case and send it to us at firstname.lastname@example.org.